If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 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'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ), 'gf_id' => 'HOM05D000892', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000892' ), 'data_identifier' => 'HOM05D000892', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000892', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '672', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p30610' => 'bna', 'A04p20950' => 'bna', 'A04p34590' => 'bna', 'A05p01080' => 'bna', 'A05p37830' => 'bna', 'A05p37850' => 'bna', 'A06p05360' => 'bna', 'A09p02410' => 'bna', 'Aa31LG1G28100' => 'aar', 'Aa31LG3G4850' => 'aar', 'Aa31LG5G2620' => 'aar', 'Aa31LG5G8790' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4856' => 'aag', 'Actinidia07251' => 'ach', 'Actinidia07923' => 'ach', 'Actinidia07993' => 'ach', 'Actinidia07994' => 'ach', 'Actinidia20273' => 'ach', 'Actinidia21083' => 'ach', 'Actinidia24219' => 'ach', 'Actinidia24860' => 'ach', 'Actinidia31266' => 'ach', 'Ah.05g179130' => 'amhyb', 'Ah.08g210500' => 'amhyb', 'Ah.08g212760' => 'amhyb', 'Ah.08g215650' => 'amhyb', 'Ah.15g093620' => 'amhyb', 'AL1G18750' => 'aly', 'AL3G23030' => 'aly', 'AL4G21400' => 'aly', 'AL4G46180' => 'aly', 'AL6G33420' => 'aly', 'AL6G49850' => 'aly', 'Aqoxy1G04274' => 'aox', 'Aqoxy2G01108' => 'aox', 'Aqoxy5G00603' => 'aox', 'Aqoxy5G00605' => 'aox', 'Aqoxy7G00015' => 'aox', 'arahy.Tifrunner.gnm1.ann1.71XUKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EU46CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN90XN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1KWLK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDB1DW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3VDET' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFLF1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6E9CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFY9ZJ' => 'arhy', 'AT1G08340' => 'ath', 'AT2G46710' => 'ath', 'AT3G11490' => 'ath', 'AT4G03100' => 'ath', 'AT5G22400' => 'ath', 'ATR0620G115' => 'atr', 'ATR0706G023' => 'atr', 'ATR0820G093' => 'atr', 'Atru.chr3.3213' => 'acertr', 'Atru.chr5.1292' => 'acertr', 'Atru.chr5.744' => 'acertr', 'Atru.chr8.1476' => 'acertr', 'AUR62004544' => 'cqu', 'AUR62006199' => 'cqu', 'AUR62009746' => 'cqu', 'AUR62022658' => 'cqu', 'AUR62034605' => 'cqu', 'AUR62036193' => 'cqu', 'AUR62036199' => 'cqu', 'AUR62036666' => 'cqu', 'AUR62037020' => 'cqu', 'BcaB01g01940' => 'bca', 'BcaB01g01982' => 'bca', 'BcaB01g02509' => 'bca', 'BcaB04g21134' => 'bca', 'BcaB05g22728' => 'bca', 'BcaB06g25614' => 'bca', 'BcaB06g29467' => 'bca', 'BcaB07g34080' => 'bca', 'BcaB08g36434' => 'bca', 'BcaC01g06705' => 'bca', 'BcaC02g07010' => 'bca', 'BcaC02g12648' => 'bca', 'BcaC03g13880' => 'bca', 'BcaC04g19570' => 'bca', 'BcaC05g29369' => 'bca', 'BcaC07g41948' => 'bca', 'BcaC07g41951' => 'bca', 'BcaC07g42530' => 'bca', 'BcaC09g48173' => 'bca', 'BcaNung03890' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00160' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00680' => 'bna', 'BolC1t05313H' => 'bol', 'BolC2t07155H' => 'bol', 'BolC3t16014H' => 'bol', 'BolC4t21777H' => 'bol', 'BolC4t27206H' => 'bol', 'BolC4t28724H' => 'bol', 'BolC5t29409H' => 'bol', 'BolC5t34316H' => 'bol', 'BolC5t34327H' => 'bol', 'BolC5t34328H' => 'bol', 'BolC8t52534H' => 'bol', 'BolC9t53181H' => 'bol', 'BraA01t04182Z' => 'bra', 'BraA02t05657Z' => 'bra', 'BraA03t12241Z' => 'bra', 'BraA04t17664Z' => 'bra', 'BraA04t18917Z' => 'bra', 'BraA05t19108Z' => 'bra', 'BraA05t22578Z' => 'bra', 'BraA05t22580Z' => 'bra', 'BraA06t23745Z' => 'bra', 'BraA09t35888Z' => 'bra', 'C02p10840' => 'bna', 'C03p37170' => 'bna', 'C04p01220' => 'bna', 'C04p56740' => 'bna', 'C04p72380' => 'bna', 'C05p06490' => 'bna', 'C05p56510' => 'bna', 'C05p56570' => 'bna', 'C05p56620' => 'bna', 'C05p56640' => 'bna', 'C09p02510' => 'bna', 'CAN.G1045.43' => 'can', 'CAN.G1524.6' => 'can', 'CAN.G397.67' => 'can', 'CAN.G426.11' => 'can', 'CAN.G694.99' => 'can', 'CANSAT25G3334' => 'cansat', 'CANSAT54G1205' => 'cansat', 'CANSAT56G2252' => 'cansat', 'CANSAT56G2935' => 'cansat', 'CANSAT64G1460' => 'cansat', 'CARHR008220' => 'chi', 'CARHR086040' => 'chi', 'CARHR120030' => 'chi', 'CARHR142060' => 'chi', 'CARHR151030' => 'chi', 'CARHR191130' => 'chi', 'CARHR251530' => 'chi', 'Carub.0001s0769' => 'cru', 'Carub.0003s1081' => 'cru', 'Carub.0004s0806' => 'cru', 'Carub.0004s2942' => 'cru', 'Carub.0006s2015' => 'cru', 'Carub.0006s3396' => 'cru', 'Ca_01656_v3' => 'car', 'Ca_09015_v3' => 'car', 'Ca_09106_v3' => 'car', 'Ca_10380_v3' => 'car', 'Ca_19412_v3' => 'car', 'Ca_29658_v3' => 'car', 'Cc01_g09010' => 'ccan', 'Cc01_g20120' => 'ccan', 'Cc02_g39820' => 'ccan', 'Cc06_g06000' => 'ccan', 'CDE04G2466' => 'cde', 'CDE05G0763' => 'cde', 'CDE06G0225' => 'cde', 'CDE08G1061' => 'cde', 'CDE11G1143' => 'cde', 'Cfa003754' => 'cfa', 'Cfa006052' => 'cfa', 'Cfa010004' => 'cfa', 'Cfa016624' => 'cfa', 'Cfa026867' => 'cfa', 'Ciclev10011475m.g' => 'ccl', 'Ciclev10019937m.g' => 'ccl', 'Ciclev10023681m.g' => 'ccl', 'Ciclev10024101m.g' => 'ccl', 'Ciclev10028229m.g' => 'ccl', 'CiPaw.02G044100' => 'cil', 'CiPaw.07G098800' => 'cil', 'CiPaw.09G015500' => 'cil', 'CiPaw.10G011100' => 'cil', 'CiPaw.13G134800' => 'cil', 'CiPaw.14G099200' => 'cil', 'ClCG02G022230' => 'cla', 'ClCG05G000520' => 'cla', 'ClCG09G006590' => 'cla', 'ClCG10G018860' => 'cla', 'COL.COLO4_06222' => 'col', 'COL.COLO4_08040' => 'col', 'COL.COLO4_29701' => 'col', 'Cpa.g.sc144.4' => 'cpa', 'Cpa.g.sc195.6' => 'cpa', 'Cpa.g.sc195.7' => 'cpa', 'Cpa.g.sc5.2' => 'cpa', 'Cpa.g.sc9.152' => 'cpa', 'CsaV3_3G007720' => 'csa', 'CsaV3_3G037380' => 'csa', 'CsaV3_6G038360' => 'csa', 'CsaV3_7G028340' => 'csa', 'CSS0003223' => 'camsi', 'CSS0010023' => 'camsi', 'CSS0024563' => 'camsi', 'CSS0025243' => 'camsi', 'CSS0027067' => 'camsi', 'CSS0030831' => 'camsi', 'CSS0040257' => 'camsi', 'CSS0040715' => 'camsi', 'CSS0047672' => 'camsi', 'DCAR_002783' => 'dca', 'DCAR_002982' => 'dca', 'DCAR_002983' => 'dca', 'DCAR_005835' => 'dca', 'DCAR_006167' => 'dca', 'DCAR_012204' => 'dca', 'DCAR_012435' => 'dca', 'DCAR_013401' => 'dca', 'DCAR_018369' => 'dca', 'DCAR_020739' => 'dca', 'Dinv11288' => 'din', 'Dinv21194' => 'din', 'Dinv21278' => 'din', 'Dinv22834' => 'din', 'Dinv31699' => 'din', 'Dinv32632' => 'din', 'Dinv32985' => 'din', 'Dinv34248' => 'din', 'Duzib093G1831' => 'dzi', 'Duzib128G1127' => 'dzi', 'Duzib133G1091' => 'dzi', 'Duzib138G0132' => 'dzi', 'Duzib138G0135' => 'dzi', 'Duzib168G1645' => 'dzi', 'Duzib170G0629' => 'dzi', 'ECA233G1222' => 'eca', 'ECA236G3913' => 'eca', 'ECA236G4461' => 'eca', 'ECA247G0125' => 'eca', 'ECA247G1007' => 'eca', 'EL10Ac1g00204' => 'bvu', 'EL10Ac7g15834' => 'bvu', 'EL10Ac7g16901' => 'bvu', 'EL10Ac7g17150' => 'bvu', 'Eucgr.A02653' => 'egr', 'Eucgr.B03841' => 'egr', 'Eucgr.E00020' => 'egr', 'Eucgr.J00501' => 'egr', 'Eucgr.K03427' => 'egr', 'Eucgr.K03429' => 'egr', 'FAN01G0949' => 'fan', 'FAN02G0202' => 'fan', 'FAN03G3158' => 'fan', 'FAN05G5599' => 'fan', 'FAN06G0435' => 'fan', 'FAN06G4421' => 'fan', 'FAN09G3508' => 'fan', 'FAN10G0786' => 'fan', 'FAN10G2399' => 'fan', 'FAN14G3756' => 'fan', 'FAN15G3134' => 'fan', 'FAN15G3451' => 'fan', 'FAN20G0172' => 'fan', 'FAN20G2104' => 'fan', 'FAN24G0093' => 'fan', 'FAN24G3394' => 'fan', 'FAN27G1637' => 'fan', 'FAN27G1704' => 'fan', 'FvH4_2g24600' => 'fve', 'FvH4_2g24611' => 'fve', 'FvH4_6g19150' => 'fve', 'FvH4_7g17360' => 'fve', 'Glyma.02G151800' => 'gma', 'Glyma.03G197000' => 'gma', 'Glyma.03G208300' => 'gma', 'Glyma.03G259800' => 'gma', 'Glyma.10G022400' => 'gma', 'Glyma.10G074400' => 'gma', 'Glyma.11G182600' => 'gma', 'Glyma.12G089900' => 'gma', 'Glyma.12G185500' => 'gma', 'Glyma.13G316000' => 'gma', 'Glyma.19G194992' => 'gma', 'Glyma.19G205467' => 'gma', 'Glyma.19G205533' => 'gma', 'Glyma.19G258900' => 'gma', 'Gohir.A01G205400' => 'ghi', 'Gohir.A05G080100' => 'ghi', 'Gohir.A07G110550' => 'ghi', 'Gohir.A08G071600' => 'ghi', 'Gohir.A08G115900' => 'ghi', 'Gohir.A08G123400' => 'ghi', 'Gohir.A09G095900' => 'ghi', 'Gohir.A09G139800' => 'ghi', 'Gohir.A11G099800' => 'ghi', 'Gohir.A11G118600' => 'ghi', 'Gohir.A12G115200' => 'ghi', 'Gohir.D01G194900' => 'ghi', 'Gohir.D05G083000' => 'ghi', 'Gohir.D07G114200' => 'ghi', 'Gohir.D08G079800' => 'ghi', 'Gohir.D08G136700' => 'ghi', 'Gohir.D08G144800' => 'ghi', 'Gohir.D09G095600' => 'ghi', 'Gohir.D09G134700' => 'ghi', 'Gohir.D11G104400' => 'ghi', 'Gohir.D11G123500' => 'ghi', 'Gohir.D12G118700' => 'ghi', 'Gorai.001G122500' => 'gra', 'Gorai.002G239000' => 'gra', 'Gorai.004G084800' => 'gra', 'Gorai.004G140000' => 'gra', 'Gorai.004G149600' => 'gra', 'Gorai.006G112300' => 'gra', 'Gorai.006G154600' => 'gra', 'Gorai.007G111700' => 'gra', 'Gorai.007G132400' => 'gra', 'Gorai.008G128400' => 'gra', 'Gorai.009G084800' => 'gra', 'GSVIVG01011015001' => 'vvi', 'GSVIVG01027410001' => 'vvi', 'GSVIVG01033865001' => 'vvi', 'GSVIVG01036109001' => 'vvi', 'HanXRQChr02g0053941' => 'han', 'HanXRQChr04g0119961' => 'han', 'HanXRQChr05g0162981' => 'han', 'HanXRQChr06g0163991' => 'han', 'HanXRQChr06g0177721' => 'han', 'HanXRQChr08g0212791' => 'han', 'HanXRQChr08g0229831' => 'han', 'HanXRQChr13g0397491' => 'han', 'HanXRQChr16g0524601' => 'han', 'Haze_04800' => 'cav', 'Haze_15711' => 'cav', 'Haze_19629' => 'cav', 'Haze_23363' => 'cav', 'Hma1.2p1_0309F.1_g120550' => 'hma', 'Hma1.2p1_0399F.1_g144260' => 'hma', 'Hma1.2p1_0587F.1_g184210' => 'hma', 'Hma1.2p1_0769F.1_g215890' => 'hma', 'HPP92_009744' => 'vpl', 'HPP92_009769' => 'vpl', 'HPP92_011332' => 'vpl', 'HPP92_011828' => 'vpl', 'HPP92_015076' => 'vpl', 'HPP92_022243' => 'vpl', 'HPP92_022244' => 'vpl', 'Hund03942' => 'sun', 'Hund05371' => 'sun', 'Hund16740' => 'sun', 'Hund19915' => 'sun', 'Hund20907' => 'sun', 'Hund27161' => 'sun', 'Lalb_Chr00c36g0408651' => 'lal', 'Lalb_Chr03g0028131' => 'lal', 'Lalb_Chr04g0259691' => 'lal', 'Lalb_Chr04g0261351' => 'lal', 'Lalb_Chr14g0376031' => 'lal', 'Lalb_Chr18g0044641' => 'lal', 'Lalb_Chr18g0047511' => 'lal', 'Lalb_Chr19g0136421' => 'lal', 'Lalb_Chr20g0111651' => 'lal', 'Lalb_Chr21g0306681' => 'lal', 'Lalb_Chr24g0393021' => 'lal', 'Lj1A236G34' => 'lonja', 'Lj1A40T79' => 'lonja', 'Lj1C254G3' => 'lonja', 'Lj1g0006063' => 'lja', 'Lj1g0016865' => 'lja', 'Lj1g0021278' => 'lja', 'Lj1g0024222' => 'lja', 'Lj2A139G35' => 'lonja', 'Lj3g0004471' => 'lja', 'Lj3g0024254' => 'lja', 'Lj3g0026873' => 'lja', 'Lj4g0017084' => 'lja', 'Lj5g0012928' => 'lja', 'Lj9A603G31' => 'lonja', 'Lsat_1_v5_gn_2_59380' => 'lsa', 'Lsat_1_v5_gn_4_32541' => 'lsa', 'Lsat_1_v5_gn_6_38921' => 'lsa', 'Lsat_1_v5_gn_7_201' => 'lsa', 'Lsat_1_v5_gn_8_55060' => 'lsa', 'Lsat_1_v5_gn_9_20721' => 'lsa', 'Lsat_1_v5_gn_9_5160' => 'lsa', 'Lsat_1_v5_gn_9_94401' => 'lsa', 'Manes.01G212600' => 'mes', 'Manes.05G018300' => 'mes', 'Manes.05G069300' => 'mes', 'Manes.08G026700' => 'mes', 'Manes.09G054000' => 'mes', 'Manes.11G162500' => 'mes', 'Mapoly0016s0151' => 'mpo', 'MBI11_g16404_MAGBIO' => 'mbi', 'MBI11_g46261_MAGBIO' => 'mbi', 'MBI12_g40860_MAGBIO' => 'mbi', 'MBI12_g42935_MAGBIO' => 'mbi', 'MBI17_g08324_MAGBIO' => 'mbi', 'MBI18_g21588_MAGBIO' => 'mbi', 'MD01G1086700' => 'mdo', 'MD03G1147700' => 'mdo', 'MD03G1274700' => 'mdo', 'MD03G1274900' => 'mdo', 'MD07G1156800' => 'mdo', 'MD11G1166500' => 'mdo', 'MD11G1296900' => 'mdo', 'MD12G1027300' => 'mdo', 'MD14G1027500' => 'mdo', 'Medtr1g089500' => 'mtr', 'Medtr2g086580' => 'mtr', 'Medtr4g052850' => 'mtr', 'Medtr5g064420' => 'mtr', 'Medtr7g081615' => 'mtr', 'Medtr7g104900' => 'mtr', 'Medtr7g107560' => 'mtr', 'Medtr8g026680' => 'mtr', 'MELO3C005990.2' => 'cme', 'MELO3C009482.2' => 'cme', 'MELO3C014500.2' => 'cme', 'MELO3C015887.2' => 'cme', 'Migut.B01911' => 'egut', 'Migut.D00236' => 'egut', 'Migut.D02438' => 'egut', 'Migut.G00638' => 'egut', 'Migut.J01019' => 'egut', 'Migut.L01790' => 'egut', 'Migut.N02121' => 'egut', 'Migut.N02486' => 'egut', 'MSTRG.10374' => 'ama', 'MSTRG.17379' => 'ama', 'MSTRG.17425' => 'ama', 'MSTRG.17704' => 'ama', 'MSTRG.18199' => 'ama', 'MSTRG.18763' => 'ama', 'MSTRG.18764' => 'ama', 'MSTRG.21037' => 'ama', 'Nitab4.5_0000307g0190' => 'nta', 'Nitab4.5_0000692g0210' => 'nta', 'Nitab4.5_0000755g0030' => 'nta', 'Nitab4.5_0001651g0080' => 'nta', 'Nitab4.5_0002093g0120' => 'nta', 'Nitab4.5_0003831g0030' => 'nta', 'Nitab4.5_0006738g0050' => 'nta', 'Nitab4.5_0009496g0020' => 'nta', 'Nn1g00401' => 'nnu', 'Nn1g06723' => 'nnu', 'Nn2g14193' => 'nnu', 'Nn3g18832' => 'nnu', 'Nn3g20242' => 'nnu', 'Nn3g21247' => 'nnu', 'Nn4g23221' => 'nnu', 'Nn4g24099' => 'nnu', 'Nn4g25899' => 'nnu', 'Nn4g26070' => 'nnu', 'Nn5g28420' => 'nnu', 'Nn6g33269' => 'nnu', 'Nn6g34856' => 'nnu', 'Nn8g39396' => 'nnu', 'Oeu002371.1' => 'oeu', 'Oeu002700.1' => 'oeu', 'Oeu016196.1' => 'oeu', 'Oeu017687.1' => 'oeu', 'Oeu019667.1' => 'oeu', 'Oeu022797.1' => 'oeu', 'Oeu035436.1' => 'oeu', 'Oeu042958.1' => 'oeu', 'Oeu047857.1' => 'oeu', 'Oeu056873.2' => 'oeu', 'Os01g0967200' => 'osa', 'Os02g0679500' => 'osa', 'Os04g0577200' => 'osa', 'Os07g0408500' => 'osa', 'Os11g0153400' => 'osa', 'Os12g0155200' => 'osa', 'Os12g0533400' => 'osa', 'Peaxi162Scf00017g00318' => 'pax', 'Peaxi162Scf00040g00112' => 'pax', 'Peaxi162Scf00102g00214' => 'pax', 'Peaxi162Scf00767g00413' => 'pax', 'Peaxi162Scf01039g00238' => 'pax', 'PGR004G0227' => 'pgr', 'PGR044G0980' => 'pgr', 'PGR088G0001' => 'pgr', 'PGR119G2067' => 'pgr', 'PGSC0003DMG400000130' => 'stu', 'PGSC0003DMG400016852' => 'stu', 'PGSC0003DMG400024030' => 'stu', 'PGSC0003DMG400026355' => 'stu', 'PGSC0003DMG401008870' => 'stu', 'Phvul.001G191300' => 'pvu', 'Phvul.001G201400' => 'pvu', 'Phvul.005G123300' => 'pvu', 'Phvul.006G116300' => 'pvu', 'Phvul.007G167100' => 'pvu', 'Phvul.011G094900' => 'pvu', 'Potri.002G176800' => 'ptr', 'Potri.004G201600' => 'ptr', 'Potri.006G211200' => 'ptr', 'Potri.009G162900' => 'ptr', 'Potri.014G103600' => 'ptr', 'Potri.014G135570' => 'ptr', 'Potri.016G078200' => 'ptr', 'Pp3c13_4010' => 'ppa', 'Pp3c26_4490' => 'ppa', 'Pp3c26_5960' => 'ppa', 'Pp3c3_5940' => 'ppa', 'Pp3c4_16800' => 'ppa', 'Pp3c4_24980' => 'ppa', 'Prupe.2G195100' => 'ppe', 'Prupe.6G132400' => 'ppe', 'Prupe.7G104200' => 'ppe', 'Prupe.8G251200' => 'ppe', 'Prupe.8G251400' => 'ppe', 'Psat1g178400' => 'psa', 'Psat3g025240' => 'psa', 'Psat3g032280' => 'psa', 'Psat4g162840' => 'psa', 'Psat5g258040' => 'psa', 'Psat6g168120' => 'psa', 'Psat7g187760' => 'psa', 'PSO063G4769' => 'pso', 'PSO135G0458' => 'pso', 'PSO170G0254' => 'pso', 'PSO210G5047' => 'pso', 'PSO339G4379' => 'pso', 'PSO339G6583' => 'pso', 'PSO384G3020' => 'pso', 'PSO384G3634' => 'pso', 'PSO407G0350' => 'pso', 'PSO782G5631' => 'pso', 'PSO801G0361' => 'pso', 'PSO832G2341' => 'pso', 'QL01p012113' => 'qlo', 'QL07p038596' => 'qlo', 'QL08p046610' => 'qlo', 'QL12p023813' => 'qlo', 'RcHm_v2.0_Chr1g0360801' => 'rch', 'RcHm_v2.0_Chr3g0474261' => 'rch', 'RcHm_v2.0_Chr5g0045671' => 'rch', 'RcHm_v2.0_Chr5g0046331' => 'rch', 'RcHm_v2.0_Chr5g0070231' => 'rch', 'RcHm_v2.0_Chr6g0292421' => 'rch', 'RcHm_v2.0_Chr6g0292441' => 'rch', 'Rhsim01G0278800' => 'rsi', 'Rhsim01G0279300' => 'rsi', 'Rhsim04G0132600' => 'rsi', 'Rhsim07G0001100' => 'rsi', 'Rhsim13G0018100' => 'rsi', 'Rhsim13G0112200' => 'rsi', 'Sabra02G0136900' => 'sbr', 'Sabra04G0136200' => 'sbr', 'Sabra06G0162800' => 'sbr', 'Sabra09G0127100' => 'sbr', 'Sabra14G0076200' => 'sbr', 'Sabra14G0101800' => 'sbr', 'Sabra16G0082700' => 'sbr', 'SalBow1G3338' => 'sbo', 'SalBow3G1584' => 'sbo', 'SalBow3G2532' => 'sbo', 'SalBow3G3089' => 'sbo', 'SalBow3G3846' => 'sbo', 'SalBow3G4561' => 'sbo', 'SalBow5G4675' => 'sbo', 'SalBow6G3445' => 'sbo', 'SalBow6G3968' => 'sbo', 'SalBow6G6182' => 'sbo', 'SalBow8G2870' => 'sbo', 'SalBow8G4720' => 'sbo', 'Sc07g0005640' => 'sci', 'Sc12g0004560' => 'sci', 'Sc21g0007030' => 'sci', 'Sc23g0001890' => 'sci', 'Sed0001608' => 'sed', 'Sed0012448' => 'sed', 'Sed0015971' => 'sed', 'Sed0016359' => 'sed', 'Sed0016749' => 'sed', 'Sed0020105' => 'sed', 'SEGI_16990' => 'sgi', 'SEGI_21546' => 'sgi', 'SEGI_26650' => 'sgi', 'SEGI_35192' => 'sgi', 'SGA_v2.0_scaffold147G36392' => 'sas', 'SGA_v2.0_scaffold172G39057' => 'sas', 'SGA_v2.0_scaffold1G00426' => 'sas', 'SGA_v2.0_scaffold31G12898' => 'sas', 'SGA_v2.0_scaffold31G12900' => 'sas', 'SGA_v2.0_scaffold35G14054' => 'sas', 'SGA_v2.0_scaffold5G03056' => 'sas', 'SMO174G0110' => 'smo', 'SMO198G0064' => 'smo', 'Solyc01g096360.3' => 'sly', 'Solyc06g084450.4' => 'sly', 'Solyc09g009970.3' => 'sly', 'Solyc09g074340.3' => 'sly', 'Solyc11g068520.3' => 'sly', 'Sopen01g040110' => 'spe', 'Sopen06g035840' => 'spe', 'Sopen09g004720' => 'spe', 'Sopen09g029180' => 'spe', 'Sopen11g027240' => 'spe', 'Sp1g06980' => 'spa', 'Sp3g09720' => 'spa', 'Sp4g10230' => 'spa', 'Sp4g28750' => 'spa', 'Sp6g03130' => 'spa', 'Sp6g22850' => 'spa', 'TAR365G0275' => 'tar', 'TAR369G0336' => 'tar', 'TAR375G0361' => 'tar', 'TAR623G1341' => 'tar', 'TAR629G2972' => 'tar', 'TAR633G1915' => 'tar', 'TAR636G0485' => 'tar', 'TAR636G1237' => 'tar', 'TAR636G3603' => 'tar', 'THA.LOC104801202' => 'tha', 'THA.LOC104814784' => 'tha', 'THA.LOC104816591' => 'tha', 'THA.LOC104816985' => 'tha', 'THA.LOC104817394' => 'tha', 'THA.LOC104826009' => 'tha', 'THA.LOC104826429' => 'tha', 'THA.LOC104826823' => 'tha', 'Thecc.01G289200' => 'tca', 'Thecc.01G335700' => 'tca', 'Thecc.05G091200' => 'tca', 'Thecc.09G281700' => 'tca', 'Thhalv10001445m.g' => 'esa', 'Thhalv10008285m.g' => 'esa', 'Thhalv10013479m.g' => 'esa', 'Thhalv10020761m.g' => 'esa', 'Thhalv10028679m.g' => 'esa', 'TPR.G11638' => 'tpr', 'TPR.G16921' => 'tpr', 'TPR.G17197' => 'tpr', 'TPR.G23312' => 'tpr', 'TPR.G30157' => 'tpr', 'TPR.G32299' => 'tpr', 'TPR.G36219' => 'tpr', 'TPR.G4485' => 'tpr', 'TPR.G7225' => 'tpr', 'TWI23G0136' => 'twi', 'TWI31G0917' => 'twi', 'TWI59G0415' => 'twi', 'TWI59G1462' => 'twi', 'TWI74G1188' => 'twi', 'TWI77G0282' => 'twi', 'TWI79G0474' => 'twi', 'unitig_0.g642' => 'ugi', 'unitig_0.g643' => 'ugi', 'unitig_22.g5251' => 'ugi', 'unitig_22.g5667' => 'ugi', 'unitig_26.g10160' => 'ugi', 'unitig_26.g10161' => 'ugi', 'unitig_578.g16019' => 'ugi', 'unitig_749.g13746' => 'ugi', 'unitig_8.g4206' => 'ugi', 'unitig_8.g4969' => 'ugi', 'vmacro02514' => 'vma', 'vmacro03321' => 'vma', 'vmacro04294' => 'vma', 'vmacro08869' => 'vma', 'vmacro14953' => 'vma', 'VMungo0540G0334' => 'vmu', 'VMungo0720G1688' => 'vmu', 'VMungo1080G0585' => 'vmu', 'VMungo1383G1079' => 'vmu', 'VMungo1383G3342' => 'vmu', 'Zm00001eb073350' => 'zma', 'Zm00001eb086060' => 'zma', 'Zm00001eb115920' => 'zma', 'Zm00001eb118590' => 'zma', 'Zm00001eb137860' => 'zma', 'Zm00001eb140060' => 'zma', 'Zm00001eb250640' => 'zma', 'Zm00001eb305690' => 'zma', 'Zm00001eb377330' => 'zma', 'Zm00001eb406860' => 'zma', 'Zm00001eb415310' => 'zma' ) $gf_id = 'HOM05D000892' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000892' ) $data_identifier = 'HOM05D000892' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 14, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 12, 'qlo' => (int) 4, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 9, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb415310' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1